生物信息学第二次作业

生物信息学第二次作业

粟米 12334148生物科学专业

用Entrez的nucleutide检索的Cyp11a序列：(共63条，包括RNA和DNA,篇幅限制，只选1条RNA序列列出)

>gi|6110612|gb|AF195119.1| Mus musculus cytochrome P450 side chain cleavage enzyme 11a1 (Cyp11a) mRNA, complete cds

AAGTGGCAGTCGTGGGGACAGTATGCTGGCTAAAGGACTTTCCCTGCGCTCAGTGCTGGTCAAAGGCTGC CAACCTTTCCTGAGCCCTACGTGGCAGGGTCCAGTGCTGAGTACTGGAAAGGGAGCTGGTACCTCTACTA GCAGTCCTAGGTCCTTCAATGAGATCCCTTCCCCTGGCGACAATGGTTGGCTAAACCTGTACCACTTCTG GAGGGAGAGTGGCACACAGAAAATCCATTACCATCAGATGCAGAGTTTCCAAAAGTATGGCCCCATTTAC AGGGAGAAGCTGGGCACTTTGGAGTCAGTTTACATCGTGGACCCCAAGGATGCGTCGATACTCTTCTCAT GCGAGGGTCCCAACCCGGAGCGGTTCCTTGTGCCCCCCTGGGTGGCCTATCACCAGTATTATCAGAGGCC CATTGGGGTCCTGTTTAAGAGTTCAGATGCCTGGAAGAAAGACCGAATCGTCCTAAACCAAGAGGTGATG GCGCCTGGAGCCATCAAGAACTTCGTGCCCCTGCTGGAAGGTGTAGCTCAGGACTTCATCAAAGTCTTAC ACAGACGCATCAAGCAGCAAAATTCTGGAAATTTCTCAGGGGTCATCAGTGATGACCTATTCCGCTTTTC CTTTGAGTCCATCAGCAGTGTTATATTTGGGGAGCGCATGGGGATGCTGGAGGAGATCGTGGATCCCGAG GCCCAGCGGTTCATCAATGCTGTCTACCAGATGTTCCACACCAGTGTCCCCATGCTCAACCTGCCTCCAG ACTTCTTTCGACTCCTCAGAACTAAGACCTGGAAGGACCATGCAGCTGCCTGGGATGTGATTTTCAATAA AGCTGATGAGTACACCCAGAACTTCTACTGGGACTTAAGGCAGAAGCGAGACTTCAGCCAGTACCCTGGT GTCCTTTATAGCCTCCTGGGGGGCAACAAGCTGCCCTTCAAGAACATCCAGGCCAACATTACCGAGATGC TGGCAGGAGGGGTGGACACGACCTCCATGACCCTGCAGTGGAACCTTTATGAGATGGCACACAACTTGAA GGTACAGGAGATGCTGCGGGCTGAAGTCCTGGCTGCCCGGCGCCAGGCCCAGGGAGACATGGCCAAGATG GTACAGTTGGTTCCACTCCTCAAAGCCAGCATCAAGGAGACACTGAGACTCCACCCCATCTCCGTGACCT TGCAGAGGTACACTGTGAATGACCTGGTGCTTCGTAATTACAAGATTCCAGCCAAGACTTTGGTACAGGT GGCTAGCTTTGCCATGGGTCGAGATCCGGGCTTCTTTCCCAATCCAAACAAGTTTGACCCAACTCGTTGG CTGGAAAAAAGCCAAAATACCACCCACTTCCGGTACTTGGGCTTTGGCTGGGGTGTTCGGCAGTGTCTGG GCCGGCGGATTGCGGAGCTGGAGATGACCATCCTCCTTATCAATCTGCTGGAGAACTTCAGAATTGAAGT TCAAAATCTCCGTGATGTGGGGACCAAGTTCAGCCTCATCCTGATGCCTGAGAACCCCATCCTCTTCAAC TTCCAGCCTCTCAAGCAGGACCTGGGCCCAGCCGTGACCAGAAAAGACAACACTGTGAACTGAAGGCTGG AGTCACATGGGGAGGTGGCCCATGGGGCATTTGAGGGTGGTATCTCTGTATCTTCAGAAACAGCACTCTG TGATTACCTGCCCAGGTTAGCTGGGCTCTCCTCTCCTTCATCCTCTTTCCCTCTTTCCCTACCCAGGGAG TTAATAAACACTTGAACACTGAGG

用Blastn检索的上述序列的同源序列：（共100条，只选1条相似度最高的列出Query cover：99%;Identi:99%）

>gi|6110612|gb|AF195119.1| Mus musculus cytochrome P450 side chain cleavage enzyme 11a1 (Cyp11a) mRNA, complete cds

AAGTGGCAGTCGTGGGGACAGTATGCTGGCTAAAGGACTTTCCCTGCGCTCAGTGCTGGTCAAAGGCTGC CAACCTTTCCTGAGCCCTACGTGGCAGGGTCCAGTGCTGAGTACTGGAAAGGGAGCTGGTACCTCTACTA GCAGTCCTAGGTCCTTCAATGAGATCCCTTCCCCTGGCGACAATGGTTGGCTAAACCTGTACCACTTCTG

GAGGGAGAGTGGCACACAGAAAATCCATTACCATCAGATGCAGAGTTTCCAAAAGTATGGCCCCATTTAC AGGGAGAAGCTGGGCACTTTGGAGTCAGTTTACATCGTGGACCCCAAGGATGCGTCGATACTCTTCTCAT GCGAGGGTCCCAACCCGGAGCGGTTCCTTGTGCCCCCCTGGGTGGCCTATCACCAGTATTATCAGAGGCC CATTGGGGTCCTGTTTAAGAGTTCAGATGCCTGGAAGAAAGACCGAATCGTCCTAAACCAAGAGGTGATG GCGCCTGGAGCCATCAAGAACTTCGTGCCCCTGCTGGAAGGTGTAGCTCAGGACTTCATCAAAGTCTTAC ACAGACGCATCAAGCAGCAAAATTCTGGAAATTTCTCAGGGGTCATCAGTGATGACCTATTCCGCTTTTC CTTTGAGTCCATCAGCAGTGTTATATTTGGGGAGCGCATGGGGATGCTGGAGGAGATCGTGGATCCCGAG GCCCAGCGGTTCATCAATGCTGTCTACCAGATGTTCCACACCAGTGTCCCCATGCTCAACCTGCCTCCAG ACTTCTTTCGACTCCTCAGAACTAAGACCTGGAAGGACCATGCAGCTGCCTGGGATGTGATTTTCAATAA AGCTGATGAGTACACCCAGAACTTCTACTGGGACTTAAGGCAGAAGCGAGACTTCAGCCAGTACCCTGGT GTCCTTTATAGCCTCCTGGGGGGCAACAAGCTGCCCTTCAAGAACATCCAGGCCAACATTACCGAGATGC TGGCAGGAGGGGTGGACACGACCTCCATGACCCTGCAGTGGAACCTTTATGAGATGGCACACAACTTGAA GGTACAGGAGATGCTGCGGGCTGAAGTCCTGGCTGCCCGGCGCCAGGCCCAGGGAGACATGGCCAAGATG GTACAGTTGGTTCCACTCCTCAAAGCCAGCATCAAGGAGACACTGAGACTCCACCCCATCTCCGTGACCT TGCAGAGGTACACTGTGAATGACCTGGTGCTTCGTAATTACAAGATTCCAGCCAAGACTTTGGTACAGGT GGCTAGCTTTGCCATGGGTCGAGATCCGGGCTTCTTTCCCAATCCAAACAAGTTTGACCCAACTCGTTGG CTGGAAAAAAGCCAAAATACCACCCACTTCCGGTACTTGGGCTTTGGCTGGGGTGTTCGGCAGTGTCTGG GCCGGCGGATTGCGGAGCTGGAGATGACCATCCTCCTTATCAATCTGCTGGAGAACTTCAGAATTGAAGT TCAAAATCTCCGTGATGTGGGGACCAAGTTCAGCCTCATCCTGATGCCTGAGAACCCCATCCTCTTCAAC TTCCAGCCTCTCAAGCAGGACCTGGGCCCAGCCGTGACCAGAAAAGACAACACTGTGAACTGAAGGCTGG AGTCACATGGGGAGGTGGCCCATGGGGCATTTGAGGGTGGTATCTCTGTATCTTCAGAAACAGCACTCTG TGATTACCTGCCCAGGTTAGCTGGGCTCTCCTCTCCTTCATCCTCTTTCCCTCTTTCCCTACCCAGGGAG TTAATAAACACTTGAACACTGAGG

用Entrez的nucleotide检索的G6PD序列：(共有68033条，包括DNA和RNA,由于篇幅限制，这里只选一条DNA序列列出)

>gi|258547416|gb|GQ429178.1| Operophtera bruceata G6PD gene, partial cds GAGTTGCTCAATCAATCCATTATCAAAAGTGAAAAAGGACCTGTGGCGAACAGGATATTTTACCTGGCAG TGCCACCCACTGTATTTGAAGAAGTGACTGTCAACATTAGAAATGCTTGTGCATCCATTAAAGGATACAC TCGAGTCATTATTGAAAAACCATTTGGA

用Blastn检索的上述序列的同源序列：（共2条，只列一条相似度最高的：Query cover：100%;Identi:96%）

>gi|258547414|gb|GQ429177.1| Operophtera brumata G6PD gene, partial cds

GAGTTGCTCAATCAATCCATCAGCAAAAGTGAAAAAGGACCTGTGGCGAACAGGATATTTTACCTAGCAGTGCCACCCACTGTATTTGAAGAAGTGACCGTCAACATTAGAAATGCTTGTGTATCCATTAAAGGATACACCCGAGTCATTATTGAAAAACCATTTGGA